https://en.wikipedia.org/wiki/Siege_of_Port_Arthur
With a spotter on a phone line at the vantage point on 203 Meter Hill overlooking Port Arthur harbor, Nogi could now bombard the Russian fleet by heavy 11-inch (280 mm) Howitzers with 500-pound (~220 kg) armor-piercing shells. He started systematically sinking the Russian ships within range.
On December 5, 1904, the battleship Poltava was sunk, followed by the battleship Retvizan on December 7, 1904, and the battleships Pobeda and Peresvet and the cruisers Pallada and Bayan on December 9, 1904. The battleship Sevastopol, although hit 5 times by the howitzer shells, managed to move out of range of the guns. Stung by the fact that the Russian Pacific Fleet had been sunk by the army and not by the Imperial Japanese Navy, and with a direct order from Tokyo that the Sevastopol was not to be allowed to escape, Admiral Togo sent in wave after wave of destroyers in six separate attacks on the sole remaining Russian battleship. After 3 weeks, the Sevastopol was still afloat, having survived 124 torpedoes fired at her while sinking two Japanese destroyers and damaging six other vessels. The Japanese had meanwhile lost the cruiser Takasago to a mine outside the harbor.
On the night of January 2, 1905, after Port Arthur surrendered, Captain Nikolai Essen of the Sevastopol had the crippled battleship scuttled in 30 fathoms (55 m) of water by opening the sea cocks on one side, so that the ship would sink on its side and could not be raised and salvaged by the Japanese. The other six ships were eventually raised and recommissioned into the Imperial Japanese Navy.
The capture of Port Arthur and the subsequent Japanese victories at the Battle of Mukden and Tsushima gave Japan a dominant military position, resulting in favorable arbitration by U.S. President Theodore Roosevelt in the Treaty of Portsmouth, which ended the war. The loss of the war in 1905 led to major political unrest in Imperial Russia (see: Russian revolution of 1905).
At the end of the war, Nogi made a report directly to Emperor Meiji during a Gozen Kaigi. When explaining battles of the siege of Port Arthur in detail, he broke down and wept, apologizing for the 56,000 lives lost in that campaign and asking to be allowed to kill himself in atonement. Emperor Meiji told him that suicide was unacceptable, as all responsibility for the war was due to imperial orders, and that Nogi must remain alive, at least as long as he himself lived.