WTH is Flynn trying to do now? He is not pro Trump, just trying to start a war. Idiot.
Federal law was changed in section 1076 so that the Governor of a state is no longer the sole commander in chief of their state's National Guard during emergencies within the state. The President of the United States could then take total control of a state's National Guard units without the governor's consent.
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National Guard (United States) - Wikipedia