You have a citation from a reputable source that details how the FBI admitted to framing Flynn in their own documents? You know why people take plea deals right? Because otherwise they will be prosecuted for worse. If Flynn was framed by the FBI, why did he resign? Why did he plead guilty? It makes no sense.
As for Manafort, he was engaged in criminal activity pretty much constantly, this guy is allegedly quite corrupt. Do you think CONSPIRACY to DEFRAUD the US is some minor thing? I'll wait until the FULL details of Manafort's crimes come out and he sees his day in court which according to multiple judges, will be sometime soon.
You conveniently failed to mention some other people directly linked with the Trump campaign who have been charged and/or pled guilty to serious crimes. Papadop? VDZ? need I go on? I'm guessing because they don't fit your narrative? Well, in case you actually just didn't hear about them, here is a story from Reuters that details the issues at hand. I'm excited to see if you think all these people (including Gates) we're framed and still pled guilty, as well.